Workshop Organizer:

Organizer:

University of Surrey (UK)

Chair:

Dr. Roman Bauer

Senior Lecturer in University of Surrey

Personal Bio

Dr Roman Bauer is a Senior Lecturer (AssociateProfessor) at the Nature Inspired Computing and Engineering research group, in the Computer Science Research Centre at the University of Surrey (UK). He received his Bachelor's and Master's Degree in Computational Science and Engineering from ETH Zuerich, Switzerland. Afterwards, he did his doctoral studies at the Institute for Neuroinformatics (ETH Zürich/Uni Zürich) on simulations of brain development. He then joined Newcastle University (UK) in 2013 as a postdoc and afterwards led his own lab funded by two fellowships (MRC Skills Development Fellowship and EPSRC UKRI Innovation Fellowship). In 2020 he became a Lecturer and in 2023 a Senior Lecturer at the Department of Computer Science, University of Surrey, where he since then leads the interdisciplinary COMBYNE research lab (www.combynelab.com).

Dr Bauer's research focuses on the computational modelling and analysis of biological dynamics, in particular those of the brain. Core components of his interests are neurodevelopment and neurodegeneration. His highly interdisciplinary research involves modern computing approaches, biological expertise, innovative machine learning methods and IT- related collaboration. Dr Bauer is co-founder and spokesperson of the international BioDynaMo collaboration, which has created the open-source and high-performance agent-based modelling software BioDynaMo (www.biodynamo.org).

Call for Papers:

Topics:

The scope of this research topic includes any computational, biomedical engineering and/or bioinformatics methods that are applied to biomedical problems. Such problems should ideally focus on the biophysical and/or genetic processes that are relevant to a given biomedical topic, such as cancer, cardiovascular disease, neurodevelopmental conditions, or neurodegenerative disorders. The application can be with regards to fundamental science, to better understand the underlying disease factors, or for computational diagnosis as well as treatment optimisation. Specific themes to be addressed include:

Computational Biomedicine

AI for Medicine

Computational Neurology

Computational Science

Agent-based Modeling

Background:

With the vast improvements in computational resources, both from a hardware as well as software perspective, it has become possible to advance and accelerate biomedical research. Indeed, computational techniques have become a fundamental pillar of research, rendering the scientific method more efficient and facilitating collaboration across disciplines. In particular, experimental and medical/clinical researchers can effectively work with computational experts since computational models have increasingly gained in detail, accuracy and realism. Along those lines, biological systems such as the brain, skin or bacterial biofilms can be captured based on experimental data from different spatial and temporal scales. Moreover, state-of-the-art AI and bioinformatics models can be employed using large-scale data-sets, which is further facilitated by the increasing availability of public databases and practicality for collaboration across labs.

This workshop will allow researchers who work in computationally-assisted biomedical research to present their work, exchange ideas and ideally foster further collaboration.

Goal/Rationale:

The goal of this research topic is to present, discuss and exchange ideas on bioinformatics and computational approaches for scientific challenges in biology and medicine, that go beyond classification and/or regression performance. Given the crucial point of explainability and interpretability in biomedical modeling, we would like to study approaches that address current flaws in black-box AI techniques. We would like to achieve a general meeting where an open discussion of current challenges in AI for biomedicine, and existing gaps is encouraged.

A focus of the meeting will be on the presentation of well-established but also novel, innovative approaches forexplainable model generation, comparison and testing. Ideally, these should facilitate interdisciplinary collaboration. Ultimately, we would like to see this meeting as a stepping stone for wider, international biomedical collaboration and grant proposals.

Submission:

Prospective authors are kindly invited to submit full papers that include title, abstract, introduction, tables, figures, conclusion and references. It is unnecessary to submit an abstract in advance. Please submit your papers in English.

Each paper should be no less than 4 pages. One regular registration can cover a paper of 6 pages, and additional pages will be charged. Please format your paper well according to the conference template before submission. Paper Template Download

Please prepare your paper in both .doc/.docx and .pdf format and submit your full paper by email with both formats attached directly to ws_guildford@icmmgh.org

Important Dates:

Process	Date & Time
Paper Submission	February 14, 2025
Review Process	2 weeks
Revise & Acceptance	2 weeks
Registration & Payment	2 weeks

Fees (VAT Included)	Amount
Registration and Publishing Fee (6 pages included)	$450
Additional Page (per extra page)	$40

Publication:

Workshop Proceedings

Accepted papers will be published in Theoretical and Natural Science (TNS) (Print ISSN 2753-8818), and will be submitted to Conference Proceedings Citation Index (CPCI), Crossref, CNKI, Portico, Engineering Village (Inspec), Google Scholar, and other databases for indexing. The situation may be affected by factors among databases like processing time, workflow, policy, etc.

Title: Theoretical and Natural Science (TNS)
Press: EWA Publishing, United Kingdom
ISSN: 2753-8818, 2753-8826 (electronic)

* The papers will be exported to production and publication on a regular basis. Early-registered papers are expected to be published online earlier.

Workshop Info:

Workshop Title:

Computational Modelling in Biology and Medicine

Date:

February 21st, 2025 (GMT)

Venue:

Surrey Space Centre, BA building, University of Surrey, Guildford, Surrey, GU2 7XH

How to Participate:

Poster

The workshop provides an opportunity for poster exhibition. Authors who are interested in presenting a poster, please submit your materials (prefer in .pdf) to ws_guildford@icmmgh.org before February 14th, 2025.

Detailed information on your presentation date and time will be confirmed closer to the workshop. If you have any questions about your presentation or the workshop, please email ws_guildford@icmmgh.org

Poster Presentation Guidelines

Poster presentations must be prepared using the template provided:
*Poster layout template for poster presentation (download)

*Poster layout background (download)
Posters should generally be in A1 size (width: 594mm x height: 841mm) and include the followings:

Title, author and co-author names, and the affiliation(s) information.

Body parts, including "Abstract", "Introduction", "Methods", "Results", "Discussion" and "Conclusions".
Presenters are suggested to set the font size properly and avoid placing anything at the margin part of the poster as it will be difficult to view.
Posters should be well illustrated. All the pictures used should be high quality and with high resolution.

(You can refer to the instructions for more detailed information. Additional presentation guidelines may be announced by workshop committees.)

Attend in person

If you want to attend the workshop on-site, please email ws_guildford@icmmgh.org. The workshop seats are limited. Both contributors and non-contributors who wish to participate in the workshop in person need to apply to the workshop organizers.

VISA:

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you'll leave the UK at the end of your visit
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My scientific studies have afforded me great gratification; and I am convinced that it will not be long before the whole world acknowledges the results of my work.

- Gregor Mendel